{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Pandas support\n", "\n", "It is convenient to use the Pandas package when dealing with numerical data, so Pint provides PintArray. A PintArray is a Pandas Extension Array, which allows Pandas to recognise the Quantity and store it in Pandas DataFrames and Series." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Basic example" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "This example will show the simplist way to use pandas with pint and the underlying objects. It's slightly fiddly as you are not reading from a file. A more normal use case is given in Reading a csv.\n", "\n", "First some imports" ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [], "source": [ "import pandas as pd \n", "import pint" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Next, we create a DataFrame with PintArrays as columns." ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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torqueangular_velocity
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" ], "text/plain": [ " torque angular_velocity\n", "0 1 1\n", "1 2 2\n", "2 2 2\n", "3 3 3" ] }, "execution_count": 2, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df = pd.DataFrame({\n", " \"torque\": pd.Series([1, 2, 2, 3], dtype=\"pint[lbf ft]\"),\n", " \"angular_velocity\": pd.Series([1, 2, 2, 3], dtype=\"pint[rpm]\"),\n", "})\n", "df" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Operations with columns are units aware so behave as we would intuitively expect." ] }, { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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torqueangular_velocitypower
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" ], "text/plain": [ " torque angular_velocity power\n", "0 1 1 1\n", "1 2 2 4\n", "2 2 2 4\n", "3 3 3 9" ] }, "execution_count": 3, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df['power'] = df['torque'] * df['angular_velocity']\n", "df" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "We can see the columns' units in the dtypes attribute" ] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "torque pint[foot * force_pound]\n", "angular_velocity pint[revolutions_per_minute]\n", "power pint[foot * force_pound * revolutions_per_minute]\n", "dtype: object" ] }, "execution_count": 4, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df.dtypes" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Each column can be accessed as a Pandas Series" ] }, { "cell_type": "code", "execution_count": 5, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "0 1\n", "1 4\n", "2 4\n", "3 9\n", "Name: power, dtype: pint[foot * force_pound * revolutions_per_minute]" ] }, "execution_count": 5, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df.power" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Which contains a PintArray" ] }, { "cell_type": "code", "execution_count": 6, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "PintArray([1 foot * force_pound * revolutions_per_minute,\n", " 4 foot * force_pound * revolutions_per_minute,\n", " 4 foot * force_pound * revolutions_per_minute,\n", " 9 foot * force_pound * revolutions_per_minute],\n", " dtype='pint[foot * force_pound * revolutions_per_minute]')" ] }, "execution_count": 6, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df.power.values" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "The PintArray contains a Quantity" ] }, { "cell_type": "code", "execution_count": 7, "metadata": {}, "outputs": [ { "data": { "text/html": [ "\\[\\begin{pmatrix}1 & 4 & 4 & 9\\end{pmatrix} foot force_pound revolutions_per_minute\\]" ], "text/latex": [ "$\\begin{pmatrix}1 & 4 & 4 & 9\\end{pmatrix}\\ \\mathrm{foot} \\cdot \\mathrm{force_pound} \\cdot \\mathrm{revolutions_per_minute}$" ], "text/plain": [ "array([1, 4, 4, 9]) " ] }, "execution_count": 7, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df.power.values.quantity" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Pandas Series accessors are provided for most Quantity properties and methods, which will convert the result to a Series where possible." ] }, { "cell_type": "code", "execution_count": 8, "metadata": {}, "outputs": [ { "data": { "text/html": [ "foot force_pound revolutions_per_minute" ], "text/latex": [ "$\\mathrm{foot} \\cdot \\mathrm{force_pound} \\cdot \\mathrm{revolutions_per_minute}$" ], "text/plain": [ "" ] }, "execution_count": 8, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df.power.pint.units" ] }, { "cell_type": "code", "execution_count": 9, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "PintArray([0.00014198092353610376 kilowatt, 0.000567923694144415 kilowatt,\n", " 0.000567923694144415 kilowatt, 0.0012778283118249339 kilowatt],\n", " dtype='pint[kilowatt]')" ] }, "execution_count": 9, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df.power.pint.to(\"kW\").values" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Reading from csv\n", "\n", "Reading from files is the far more standard way to use pandas. To facilitate this, DataFrame accessors are provided to make it easy to get to PintArrays. " ] }, { "cell_type": "code", "execution_count": 10, "metadata": {}, "outputs": [], "source": [ "import pandas as pd \n", "import pint\n", "import io" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Here's the contents of the csv file." ] }, { "cell_type": "code", "execution_count": 11, "metadata": {}, "outputs": [], "source": [ "test_data = '''speed,mech power,torque,rail pressure,fuel flow rate,fluid power\n", "rpm,kW,N m,bar,l/min,kW\n", "1000.0,,10.0,1000.0,10.0,\n", "1100.0,,10.0,100000000.0,10.0,\n", "1200.0,,10.0,1000.0,10.0,\n", "1200.0,,10.0,1000.0,10.0,'''" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Let's read that into a DataFrame.\n", "Here io.StringIO is used in place of reading a file from disk, whereas a csv file path would typically be used and is shown commented." ] }, { "cell_type": "code", "execution_count": 12, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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speedmech powertorquerail pressurefuel flow ratefluid power
rpmkWN mbarl/minkW
01000.0NaN10.01000.010.0NaN
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21200.0NaN10.01000.010.0NaN
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" ], "text/plain": [ " speed mech power torque rail pressure fuel flow rate fluid power\n", " rpm kW N m bar l/min kW\n", "0 1000.0 NaN 10.0 1000.0 10.0 NaN\n", "1 1100.0 NaN 10.0 100000000.0 10.0 NaN\n", "2 1200.0 NaN 10.0 1000.0 10.0 NaN\n", "3 1200.0 NaN 10.0 1000.0 10.0 NaN" ] }, "execution_count": 12, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df = pd.read_csv(io.StringIO(test_data),header=[0,1])\n", "# df = pd.read_csv(\"/path/to/test_data.csv\",header=[0,1])\n", "df" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Then use the DataFrame's pint accessor's quantify method to convert the columns from `np.ndarray`s to PintArrays, with units from the bottom column level." ] }, { "cell_type": "code", "execution_count": 13, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "speed rpm float64\n", "mech power kW float64\n", "torque N m float64\n", "rail pressure bar float64\n", "fuel flow rate l/min float64\n", "fluid power kW float64\n", "dtype: object" ] }, "execution_count": 13, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df.dtypes" ] }, { "cell_type": "code", "execution_count": 14, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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speedmech powertorquerail pressurefuel flow ratefluid power
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" ], "text/plain": [ " speed mech power torque rail pressure fuel flow rate fluid power\n", "0 1000.0 nan 10.0 1000.0 10.0 nan\n", "1 1100.0 nan 10.0 100000000.0 10.0 nan\n", "2 1200.0 nan 10.0 1000.0 10.0 nan\n", "3 1200.0 nan 10.0 1000.0 10.0 nan" ] }, "execution_count": 14, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_ = df.pint.quantify(level=-1)\n", "df_" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "As previously, operations between DataFrame columns are unit aware" ] }, { "cell_type": "code", "execution_count": 15, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "0 10000.0\n", "1 11000.0\n", "2 12000.0\n", "3 12000.0\n", "dtype: pint[meter * newton * revolutions_per_minute]" ] }, "execution_count": 15, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_.speed*df_.torque" ] }, { "cell_type": "code", "execution_count": 16, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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speedmech powertorquerail pressurefuel flow ratefluid power
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" ], "text/plain": [ " speed mech power torque rail pressure fuel flow rate fluid power\n", "0 1000.0 nan 10.0 1000.0 10.0 nan\n", "1 1100.0 nan 10.0 100000000.0 10.0 nan\n", "2 1200.0 nan 10.0 1000.0 10.0 nan\n", "3 1200.0 nan 10.0 1000.0 10.0 nan" ] }, "execution_count": 16, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_" ] }, { "cell_type": "code", "execution_count": 17, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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speedmech powertorquerail pressurefuel flow ratefluid power
01000.010000.010.01000.010.010000.0
11100.011000.010.0100000000.010.01000000000.0
21200.012000.010.01000.010.010000.0
31200.012000.010.01000.010.010000.0
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" ], "text/plain": [ " speed mech power torque rail pressure fuel flow rate fluid power\n", "0 1000.0 10000.0 10.0 1000.0 10.0 10000.0\n", "1 1100.0 11000.0 10.0 100000000.0 10.0 1000000000.0\n", "2 1200.0 12000.0 10.0 1000.0 10.0 10000.0\n", "3 1200.0 12000.0 10.0 1000.0 10.0 10000.0" ] }, "execution_count": 17, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_['mech power'] = df_.speed*df_.torque\n", "df_['fluid power'] = df_['fuel flow rate'] * df_['rail pressure']\n", "df_" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "The DataFrame's `pint.dequantify` method then allows us to retrieve the units information as a header row once again." ] }, { "cell_type": "code", "execution_count": 18, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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speedmech powertorquerail pressurefuel flow ratefluid power
unitrevolutions_per_minutemeter * newton * revolutions_per_minutemeter * newtonbarliter / minutebar * liter / minute
01000.010000.010.01000.010.01.000000e+04
11100.011000.010.0100000000.010.01.000000e+09
21200.012000.010.01000.010.01.000000e+04
31200.012000.010.01000.010.01.000000e+04
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" ], "text/plain": [ " speed mech power \\\n", "unit revolutions_per_minute meter * newton * revolutions_per_minute \n", "0 1000.0 10000.0 \n", "1 1100.0 11000.0 \n", "2 1200.0 12000.0 \n", "3 1200.0 12000.0 \n", "\n", " torque rail pressure fuel flow rate fluid power \n", "unit meter * newton bar liter / minute bar * liter / minute \n", "0 10.0 1000.0 10.0 1.000000e+04 \n", "1 10.0 100000000.0 10.0 1.000000e+09 \n", "2 10.0 1000.0 10.0 1.000000e+04 \n", "3 10.0 1000.0 10.0 1.000000e+04 " ] }, "execution_count": 18, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_.pint.dequantify()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "This allows for some rather powerful abilities. For example, to change single column units" ] }, { "cell_type": "code", "execution_count": 19, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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speedmech powertorquerail pressurefuel flow ratefluid power
unitrevolutions_per_minutekilowattmeter * newtonbarliter / minutekilowatt
01000.01.04719810.01000.010.01.666667e+01
11100.01.15191710.0100000000.010.01.666667e+06
21200.01.25663710.01000.010.01.666667e+01
31200.01.25663710.01000.010.01.666667e+01
\n", "
" ], "text/plain": [ " speed mech power torque rail pressure \\\n", "unit revolutions_per_minute kilowatt meter * newton bar \n", "0 1000.0 1.047198 10.0 1000.0 \n", "1 1100.0 1.151917 10.0 100000000.0 \n", "2 1200.0 1.256637 10.0 1000.0 \n", "3 1200.0 1.256637 10.0 1000.0 \n", "\n", " fuel flow rate fluid power \n", "unit liter / minute kilowatt \n", "0 10.0 1.666667e+01 \n", "1 10.0 1.666667e+06 \n", "2 10.0 1.666667e+01 \n", "3 10.0 1.666667e+01 " ] }, "execution_count": 19, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_['fluid power'] = df_['fluid power'].pint.to(\"kW\")\n", "df_['mech power'] = df_['mech power'].pint.to(\"kW\")\n", "df_.pint.dequantify()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "The units are harder to read than they need be, so lets change pints default format for displaying units." ] }, { "cell_type": "code", "execution_count": 20, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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speedmech powertorquerail pressurefuel flow ratefluid power
unitrpmkWN·mbarl/minkW
01000.01.04719810.01000.010.01.666667e+01
11100.01.15191710.0100000000.010.01.666667e+06
21200.01.25663710.01000.010.01.666667e+01
31200.01.25663710.01000.010.01.666667e+01
\n", "
" ], "text/plain": [ " speed mech power torque rail pressure fuel flow rate fluid power\n", "unit rpm kW N·m bar l/min kW\n", "0 1000.0 1.047198 10.0 1000.0 10.0 1.666667e+01\n", "1 1100.0 1.151917 10.0 100000000.0 10.0 1.666667e+06\n", "2 1200.0 1.256637 10.0 1000.0 10.0 1.666667e+01\n", "3 1200.0 1.256637 10.0 1000.0 10.0 1.666667e+01" ] }, "execution_count": 20, "metadata": {}, "output_type": "execute_result" } ], "source": [ "pint.PintType.ureg.default_format = \"~P\"\n", "df_.pint.dequantify()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "or the entire table's units" ] }, { "cell_type": "code", "execution_count": 21, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
\n", "\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
speedmech powertorquerail pressurefuel flow ratefluid power
unitrad/skg·m²/s³kg·m²/s²kg/m/s²m³/skg·m²/s³
0104.7197551047.19755110.01.000000e+080.0001671.666667e+04
1115.1917311151.91730610.01.000000e+130.0001671.666667e+09
2125.6637061256.63706110.01.000000e+080.0001671.666667e+04
3125.6637061256.63706110.01.000000e+080.0001671.666667e+04
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" ], "text/plain": [ " speed mech power torque rail pressure fuel flow rate \\\n", "unit rad/s kg·m²/s³ kg·m²/s² kg/m/s² m³/s \n", "0 104.719755 1047.197551 10.0 1.000000e+08 0.000167 \n", "1 115.191731 1151.917306 10.0 1.000000e+13 0.000167 \n", "2 125.663706 1256.637061 10.0 1.000000e+08 0.000167 \n", "3 125.663706 1256.637061 10.0 1.000000e+08 0.000167 \n", "\n", " fluid power \n", "unit kg·m²/s³ \n", "0 1.666667e+04 \n", "1 1.666667e+09 \n", "2 1.666667e+04 \n", "3 1.666667e+04 " ] }, "execution_count": 21, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_.pint.to_base_units().pint.dequantify()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Advanced example\n", "This example shows alternative ways to use pint with pandas and other features.\n", "\n", "Start with the same imports." ] }, { "cell_type": "code", "execution_count": 22, "metadata": {}, "outputs": [], "source": [ "import pandas as pd \n", "import pint" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "We'll be use a shorthand for PintArray" ] }, { "cell_type": "code", "execution_count": 23, "metadata": {}, "outputs": [], "source": [ "PA_ = pint.PintArray" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "And set up a unit registry and quantity shorthand." ] }, { "cell_type": "code", "execution_count": 24, "metadata": {}, "outputs": [], "source": [ "ureg=pint.UnitRegistry()\n", "Q_=ureg.Quantity" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Operations between PintArrays of different unit registry will not work. We can change the unit registry that will be used in creating new PintArrays to prevent this issue." ] }, { "cell_type": "code", "execution_count": 25, "metadata": {}, "outputs": [], "source": [ "pint.PintType.ureg = ureg" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "These are the possible ways to create a PintArray.\n", "\n", "Note that pint[unit] must be used for the Series constuctor, whereas the PintArray constructor allows the unit string or object." ] }, { "cell_type": "code", "execution_count": 26, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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" ], "text/plain": [ " length width distance height depth\n", "0 1 2 2 2 2\n", "1 2 3 3 3 3" ] }, "execution_count": 26, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df = pd.DataFrame({\n", " \"length\" : pd.Series([1,2], dtype=\"pint[m]\"),\n", " \"width\" : PA_([2,3], dtype=\"pint[m]\"),\n", " \"distance\" : PA_([2,3], dtype=\"m\"),\n", " \"height\" : PA_([2,3], dtype=ureg.m),\n", " \"depth\" : PA_.from_1darray_quantity(Q_([2,3],ureg.m)),\n", " })\n", "df" ] }, { "cell_type": "code", "execution_count": 27, "metadata": {}, "outputs": [ { "data": { "text/html": [ "meter" ], "text/latex": [ "$\\mathrm{meter}$" ], "text/plain": [ "" ] }, "execution_count": 27, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df.length.values.units" ] } ], "metadata": { "anaconda-cloud": {}, "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.6.5" } }, "nbformat": 4, "nbformat_minor": 2 }